![]() Four additional annotated VCFs (Data Type: Annotated Somatic Mutation) are produced by adding biologically relevant information about each variant. Four raw VCFs (Data Type: Raw Simple Somatic Mutation) are produced for each tumor/normal pair of BAMs. VCF files report the somatic variants that were detected by each of the four variant callers. The GDC DNA-Seq somatic variant-calling pipeline compares a set of matched tumor/normal alignments and produces a VCF file.
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